Statdel program for prioritizing pathogenic chromosomal deletions

Jurg Ott, 17 July 2017

Introduction

This website refers to a computer program, statdel, described in Imai et al. (2017). Here, just the basic instructions for its use are provided.

Parameter file

The program needs to be invoked in a command window (Windows) or terminal window (Linux) by typing on the command line, for example: statdel Pt369.param, where the second item refers to the parameter file required. In the program package, a sample parameter file is included and provides information on the relevant parameters.

Included files

The following files are included in the program package:

errtrap.p

include file to source program

hdr_scores_Pt369.txt

sample data file

statdel

Linux executable

statdel.exe

Windows executable

statdel.pas

source program

StatdelPt369.out

sample output file

overlap.p

include file to source program

Pt369.param

sample parameter file

readstr.p

include file to source program


Literature

Imai et al (2017) HDR-del: A tool based on Hamming distance for prioritizing pathogenic chromosomal deletions in exome sequencing, Human Mutation (2017, in press)